Secondary Structure

The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida

Genetics / Mitochondria / Phylogeny / Mitochondrial DNA / Animals / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Mitochondrial Genome / Secondary Structure / Control Region / Base Sequence / Nucleic Acid Conformation / Arachnida / Gene Order / Phylogenetic analysis / Genome / Gene / Mitochondrial Genome / Secondary Structure / Control Region / Base Sequence / Nucleic Acid Conformation

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Position dependence of non-polar amino acid intrinsic helical propensities1

Algorithms / Molecular Biology / Statistical Analysis / Stability / Molecular modeling / Entropy / Molecular / Circular Dichroism / Peptides / Protein structure / Van Der Waals / Amino Acids / Secondary Structure / Protein Secondary Structure Prediction / Folding / Methionine / Model System / Amino Acid Profile / Glycine / Energy Transfer / Amino Acid Sequence / Force Field Analysis / Biochemistry and cell biology / Molecular Sequence Data / Entropy / Molecular / Circular Dichroism / Peptides / Protein structure / Van Der Waals / Amino Acids / Secondary Structure / Protein Secondary Structure Prediction / Folding / Methionine / Model System / Amino Acid Profile / Glycine / Energy Transfer / Amino Acid Sequence / Force Field Analysis / Biochemistry and cell biology / Molecular Sequence Data

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Ancestral Sequence Reconstruction in Primate Mitochondrial DNA: Compositional Bias and Effect on Functional Inference

Evolutionary Biology / Genetics / Molecular Biology / Molecular Evolution / Mitochondria / Primates / Phylogeny / Mitochondrial DNA / Humans / Maximum Likelihood / Animals / Molecular biology and evolution / Secondary Structure / Cytochrome B / Protein Function Prediction / Amino Acid Sequence / In Silico / Bayes Theorem / Likelihood Functions / Nucleotides / Biochemistry and cell biology / Functional Properties / Primates / Phylogeny / Mitochondrial DNA / Humans / Maximum Likelihood / Animals / Molecular biology and evolution / Secondary Structure / Cytochrome B / Protein Function Prediction / Amino Acid Sequence / In Silico / Bayes Theorem / Likelihood Functions / Nucleotides / Biochemistry and cell biology / Functional Properties

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Phylogenetic analyses among octocorals (Cnidaria): mitochondrial and nuclear DNA sequences (lsu-rRNA, 16S and ssu-rRNA, 18S) support two convergent clades of branching gorgonians

Evolutionary Biology / Genetics / Zoology / RNA / Molecular Evolution / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence / Molecular Sequence Data / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence / Molecular Sequence Data

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Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference

Evolutionary Biology / Genetics / Molecular Biology / Molecular Evolution / Mitochondria / Primates / Phylogeny / Mitochondrial DNA / Humans / Maximum Likelihood / Animals / Molecular biology and evolution / Secondary Structure / Cytochrome B / Protein Function Prediction / Amino Acid Sequence / In Silico / Bayes Theorem / Likelihood Functions / Nucleotides / Biochemistry and cell biology / Functional Properties / Primates / Phylogeny / Mitochondrial DNA / Humans / Maximum Likelihood / Animals / Molecular biology and evolution / Secondary Structure / Cytochrome B / Protein Function Prediction / Amino Acid Sequence / In Silico / Bayes Theorem / Likelihood Functions / Nucleotides / Biochemistry and cell biology / Functional Properties

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Mitochondrial tRNA sequences as unusual replication origins: pathogenic implications for Homo sapiens

Aging / DNA replication / Mitochondria / Theoretical biology / Biological Sciences / Humans / Mutation / Mathematical Sciences / Functional Capacity / Homo Sapiens / Genome / Mitochondrial Genome / Mitochondrial Diseases / Genome Organization / Secondary Structure / single stranded DNA / Cumulant / Humans / Mutation / Mathematical Sciences / Functional Capacity / Homo Sapiens / Genome / Mitochondrial Genome / Mitochondrial Diseases / Genome Organization / Secondary Structure / single stranded DNA / Cumulant

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Local RNA base pairing probabilities in large sequences

Bioinformatics / Algorithms / RNA / Non Coding Rna / Biological Sciences / Software / Sequence alignment / Computer Simulation / Mathematical Sciences / Secondary Structure / Software / Sequence alignment / Computer Simulation / Mathematical Sciences / Secondary Structure

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Phylogenetic analyses among octocorals (Cnidaria): mitochondrial and nuclear DNA sequences (lsu-rRNA, 16S and ssu-rRNA, 18S) support two convergent clades of branching gorgonians

Evolutionary Biology / Genetics / Zoology / RNA / Molecular Evolution / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence / Molecular Sequence Data / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence / Molecular Sequence Data

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Amino acid sequence, biochemical characterization, and comparative modeling of a nonspecific lipid transfer protein from Amaranthus hypochondriacus

Protein Folding / Mass Spectrometry / Lipids / Circular Dichroism / Maize / High Performance Liquid Chromatography / PLANT DEFENSE / High Pressure Liquid Chromatography / Protein Sequence Analysis / Secondary Structure / Amaranthus / Protein Secondary Structure Prediction / Comparative modeling / Molecular Mass / Plant species / Molecular weight / Species Specificity / Amino Acid Sequence / Protein Binding / PLANT PROTEINS / Biochemistry and cell biology / High Performance Liquid Chromatography / PLANT DEFENSE / High Pressure Liquid Chromatography / Protein Sequence Analysis / Secondary Structure / Amaranthus / Protein Secondary Structure Prediction / Comparative modeling / Molecular Mass / Plant species / Molecular weight / Species Specificity / Amino Acid Sequence / Protein Binding / PLANT PROTEINS / Biochemistry and cell biology

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Novel antimicrobial peptides derived from human immunodeficiency virus type 1 and other lentivirus transmembrane proteins

Genetics / Microbiology / Medical Microbiology / Molecular modeling / HIV / Humans / Infectious Disease / Gram Positive / Peptides / Structure Analysis / Antimicrobial Peptide / Protein Sequence Analysis / Human immunodeficiency virus / Spectrum / Gram-negative bacteria / Anti-Bacterial Agents / Secondary Structure / Calmodulin / Antimicrobial agents / Microbial Sensitivity Tests / Amino Acid Profile / Simian Immunodeficiency Virus / Amino Acid Sequence / Antimicrobial photodynamic therapy / Functional Properties / Host Defense / Humans / Infectious Disease / Gram Positive / Peptides / Structure Analysis / Antimicrobial Peptide / Protein Sequence Analysis / Human immunodeficiency virus / Spectrum / Gram-negative bacteria / Anti-Bacterial Agents / Secondary Structure / Calmodulin / Antimicrobial agents / Microbial Sensitivity Tests / Amino Acid Profile / Simian Immunodeficiency Virus / Amino Acid Sequence / Antimicrobial photodynamic therapy / Functional Properties / Host Defense

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Novel Antimicrobial Peptides Derived from Human Immunodeficiency Virus Type 1 and Other Lentivirus Transmembrane Proteins

Genetics / Microbiology / Medical Microbiology / Molecular modeling / HIV / Humans / Infectious Disease / Gram Positive / Peptides / Structure Analysis / Antimicrobial Peptide / Protein Sequence Analysis / Human immunodeficiency virus / Spectrum / Gram-negative bacteria / Anti-Bacterial Agents / Secondary Structure / Calmodulin / Antimicrobial agents / Microbial Sensitivity Tests / Amino Acid Profile / Simian Immunodeficiency Virus / Amino Acid Sequence / Antimicrobial photodynamic therapy / Functional Properties / Host Defense / Humans / Infectious Disease / Gram Positive / Peptides / Structure Analysis / Antimicrobial Peptide / Protein Sequence Analysis / Human immunodeficiency virus / Spectrum / Gram-negative bacteria / Anti-Bacterial Agents / Secondary Structure / Calmodulin / Antimicrobial agents / Microbial Sensitivity Tests / Amino Acid Profile / Simian Immunodeficiency Virus / Amino Acid Sequence / Antimicrobial photodynamic therapy / Functional Properties / Host Defense

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Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency

Algorithms / Thermodynamics / RNA / Biotechnology / RNA silencing / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides / Multidisciplinary / Gene Silencing / Nature / RNA interference / Cell line / Humans / Plasmids / microRNAs / Secondary Structure / Degeneration / RNA Structure / Structure Determination / RNA Secondary Structure / Nucleic Acid Conformation / Nucleotides

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Phylogenetic analyses among octocorals (Cnidaria): mitochondrial and nuclear DNA sequences (lsu-rRNA, 16S and ssu-rRNA, 18S) support two convergent clades of …

Evolutionary Biology / Genetics / Zoology / RNA / Molecular Evolution / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence / Scanning Electron Microscopy / DNA / Phylogeny / Mitochondrial DNA / Anthozoa / Escherichia coli / Animals / Molecular Phylogenetics and Evolution / nuclear DNA / Molecular phylogenetics / Deep water / Secondary Structure / Maximum Parsimony / Base Sequence / SSU rRNA / Nucleic Acid Conformation / DNA sequence

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Phylogeny of protozoa deduced from 5S rRNA sequences

Evolutionary Biology / Genetics / Molecular Evolution / Phylogeny / Animals / Green Algae / Chlamydomonas / Secondary Structure / Phylogenetic Tree / Species Specificity / Vascular Plants / Base Sequence / Nucleic Acid Conformation / Biochemistry and cell biology / Green Algae / Chlamydomonas / Secondary Structure / Phylogenetic Tree / Species Specificity / Vascular Plants / Base Sequence / Nucleic Acid Conformation / Biochemistry and cell biology

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Feline lentiviruses demonstrate differences in receptor repertoire and envelope structural elements

Virology / Cats / Biological Sciences / Virulence / Cell line / Animals / Glycosylation / T lymphocytes / Lions / Secondary Structure / Puma / Amino Acid Sequence / Base Sequence / Feline immunodeficiency virus / Animals / Glycosylation / T lymphocytes / Lions / Secondary Structure / Puma / Amino Acid Sequence / Base Sequence / Feline immunodeficiency virus

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Electromechanical Unzipping of Individual DNA Molecules Using Synthetic Sub-2 nm Pores

Electrochemistry / Electronics / Kinetics / Biotechnology / Life Sciences / Nanocomposites / Nanoparticles / Nanotechnology / Multidisciplinary / Single molecule / DNA / Temperature / Secondary Structure / Time Factors / Very high throughput / Lipid bilayers / Dwell Time / Lipid Bilayer / Nucleic Acid Conformation / Static Electricity / Nucleic Acid / Nanocomposites / Nanoparticles / Nanotechnology / Multidisciplinary / Single molecule / DNA / Temperature / Secondary Structure / Time Factors / Very high throughput / Lipid bilayers / Dwell Time / Lipid Bilayer / Nucleic Acid Conformation / Static Electricity / Nucleic Acid

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